Domain enhanced lookup time accelerated blast
WebApr 22, 2013 · We describe a new method, called domain enhanced lookup time accelerated BLAST (DELTA-BLAST), which searches a database of pre-constructed … WebBoratyn GM, Schäffer AA, Agarwala R, Altschul SF, Lipman DJ, & Madden T.L. (2012) “Domain enhanced lookup time accelerated BLAST.” Biol Direct. 2012 Apr 17;7:12. PubMed Boratyn GM, Thierry-Mieg J, Thierry-Mieg D, Busby B, Madden T.L. (2024) “Magic-BLAST, an accurate RNA-seq aligner for long and short reads.”
Domain enhanced lookup time accelerated blast
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WebApr 17, 2012 · We describe a new method, called domain enhanced lookup time accelerated BLAST (DELTA-BLAST), which searches a database of pre-constructed … WebResults We describe a new method, called domain enhanced lookup time accelerated BLAST (DELTA-BLAST), which searches a database of pre-constructed PSSMs before …
WebOct 7, 2024 · To explore this homology, we performed a genome-wide comparison between human and mimivirus using DELTA-BLAST (Domain Enhanced Lookup Time … WebApr 17, 2012 · We describe a new method, called domain enhanced lookup time accelerated BLAST (DELTA-BLAST), which searches a database of pre-constructed …
http://www.science.lecture.ub.ac.id/files/2012/04/Domain-enhanced-lookup-time-accelerated-BLAST.pdf WebApr 16, 1999 · A new method is described, called domain enhanced lookup time accelerated BLAST (DELTA-BLAST), which searches a database of pre-constructed PSSMs before searching a protein-sequence database, to yield better homology detection, and is a useful program for the detection of remote protein homologs. Expand
WebResults We describe a new method, called domain enhanced lookup time accelerated BLAST (DELTA-BLAST), which searches a database of pre-constructed PSSMs before …
We describe a new method, called domain enhanced lookup time accelerated BLAST (DELTA-BLAST), which searches a database of pre-constructed PSSMs before searching a protein-sequence database, to yield better homology detection. For its PSSMs, DELTA-BLAST employs a subset of NCBI’s Conserved … See more We evaluated the performance of DELTA-BLAST using the ASTRAL 40 subset [30] of release 1.75 of the Structural Classification of Proteins (SCOP) [31] database. To create … See more In this work, CDD is both a domain annotation resource and a collection of protein family profiles used for building sequence search models. Each conserved domain (CD) within CDD consists of a multiple sequence … See more The PSSM scores for any column all take the form (ln Ri )/λ, where Ri is the ratio of target to background frequency for residue i, and λ is a scaling … See more To construct an MSA from CDs, we first collect all CD segments that have been aligned to the query with E-value below a user-specified threshold. Analogously to PSI-BLAST, we use the query as a template for … See more east bay fish plantingWebDomain enhanced lookup time Accelerated BLAST (DELTA- BLAST) is faster, more sensitive and accurate than PSI-BLAST. PSI-BLAST creates multiple alignments and position-specific scoring matrices (PSSMs). DELTA-BLAST searches a query against a library of pre- computed PSSMs. cuban beans and rice dishWebApr 22, 2013 · We describe a new method, called domain enhanced lookup time accelerated BLAST (DELTA-BLAST), which searches a database of pre-constructed PSSMs before searching a protein-sequence database, to ... cuban beans and rice recipe easyeast bay flats floridaWebPSI-BLAST or PHI-BLAST or DELTA-BLAST (Domain Enhanced Lookup Time Accelerated BLAST) search - (NCBI) Position-Specific Iterative BLAST creates a profile after the initial search. Genome vs Genome BLAST - (NCBI) BLAST two sequences against one another. N.B. This utilizes BLASTN, P, X as well as TBLASTN and TBLASTX. cuban beans microwaveWebQuickBLASTP is an accelerated version of BLASTP that is very fast and works best if the target percent identity is 50% or more. BlastP simply compares a protein query to a … cuban beaches resortsWebJun 17, 2015 · Domain Enhanced Lookup Time Accelerated BLAST (DELTA-BLAST) is an algorithm which "searches a database of pre-constructed PSSMs before searching … cuban beans and rice frozen